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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4j0s 1H3 Bromodomain-containing protein 4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4j0s 1H3Bromodomain-containing protein 4 / 0.945
4j0r 1H2Bromodomain-containing protein 4 / 0.886
4gpj 0Q1Bromodomain-containing protein 4 / 0.798
4bw1 S5BBromodomain-containing protein 4 / 0.786
3zyu 1GHBromodomain-containing protein 4 / 0.785
4akn S5BBromodomain-containing protein 2 / 0.764
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4bw4 9B6Bromodomain-containing protein 4 / 0.733
4a9n A9NBromodomain-containing protein 2 / 0.731
4c67 L5SBromodomain-containing protein 4 / 0.730
4bw3 9BMBromodomain-containing protein 4 / 0.728
4alh A9PBromodomain-containing protein 2 / 0.720
4a9o A9OBromodomain-containing protein 2 / 0.708
4alg 1GHBromodomain-containing protein 2 / 0.708
4f3i 0S6Bromodomain-containing protein 4 / 0.687
4nqm Y1ZBromodomain-containing protein 4 / 0.680
4bw2 UTHBromodomain-containing protein 4 / 0.679
5dfc EAMBromodomain-containing protein 2 / 0.679
3svg ODRBromodomain-containing protein 4 / 0.676
4qzs JQ1Bromodomain-containing protein 4 / 0.671
4e96 0NSBromodomain-containing protein 4 / 0.662
4lr6 1XABromodomain-containing protein 4 / 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4men 25KBromodomain-containing protein 4 / 0.658
4lrg 1XBBromodomain-containing protein 4 / 0.655
4uyf 73BBromodomain-containing protein 2 / 0.653