1.970 Å
X-ray
2012-03-03
| Name: | Bromodomain-containing protein 2 |
|---|---|
| ID: | BRD2_HUMAN |
| AC: | P25440 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 11 % |
| C | 89 % |
| B-Factor: | 39.468 |
|---|---|
| Number of residues: | 19 |
| Including | |
| Standard Amino Acids: | 18 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.385 | 712.125 |
| % Hydrophobic | % Polar |
|---|---|
| 59.24 | 40.76 |
| According to VolSite | |

| HET Code: | A9P |
|---|---|
| Formula: | C11H11NO |
| Molecular weight: | 173.211 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 53.2 % |
| Polar Surface area: | 26.03 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 1 |
| H-Bond Donors: | 0 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 0.522 | 7.80769 | 21.6128 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C11 | CB | PRO- 98 | 3.88 | 0 | Hydrophobic |
| C5 | CE1 | PHE- 99 | 3.7 | 0 | Hydrophobic |
| C5 | CG2 | VAL- 103 | 4.12 | 0 | Hydrophobic |
| C2 | CD1 | LEU- 108 | 4.41 | 0 | Hydrophobic |
| C10 | CD2 | LEU- 108 | 4.14 | 0 | Hydrophobic |
| C12 | CD1 | LEU- 108 | 3.55 | 0 | Hydrophobic |
| C2 | CD1 | LEU- 110 | 3.39 | 0 | Hydrophobic |
| C2 | CE2 | TYR- 155 | 4.41 | 0 | Hydrophobic |
| N | ND2 | ASN- 156 | 3.49 | 164.22 | H-Bond (Protein Donor) |
| O | ND2 | ASN- 156 | 3.12 | 161.27 | H-Bond (Protein Donor) |
| C5 | CD1 | ILE- 162 | 4.01 | 0 | Hydrophobic |
| C8 | CD1 | ILE- 162 | 3.93 | 0 | Hydrophobic |