Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ikr PVP Methionine aminopeptidase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ikr PVPMethionine aminopeptidase 1 / 0.830
4iks TFDMethionine aminopeptidase 1 / 0.768
2g6p HM2Methionine aminopeptidase 1 / 0.759
4iku SHXMethionine aminopeptidase 1 / 0.719
4ikt TFVMethionine aminopeptidase 1 / 0.718
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.691
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.691
2zue ANPArginine--tRNA ligase 6.1.1.19 0.691
3rzp PRFNADPH-dependent 7-cyano-7-deazaguanine reductase / 0.691
3uxv GUNNADPH-dependent 7-cyano-7-deazaguanine reductase / 0.691
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.691
4iok ADPFormate--tetrahydrofolate ligase / 0.691
4jjz ADPFormate--tetrahydrofolate ligase / 0.691