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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4hrq AZG Cytidine and deoxycytidylate deaminase zinc-binding region

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4hrq AZGCytidine and deoxycytidylate deaminase zinc-binding region / 0.817
1eve E20Acetylcholinesterase 3.1.1.7 0.660
1hpz AAPGag-Pol polyprotein 2.7.7.49 0.660
1jum BERHTH-type transcriptional regulator QacR / 0.660
1kbo 340NAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.660
1sqi 8694-hydroxyphenylpyruvate dioxygenase / 0.660
2a3b CFFEndochitinase B1 3.2.1.14 0.660
2aou CQAHistamine N-methyltransferase 2.1.1.8 0.660
2f98 NGVAklanonic acid methyl ester cyclase AcmA 5.5.1.23 0.660
2g97 DGBNicotinamide phosphoribosyltransferase 2.4.2.12 0.660
2gz7 D3FOrf1a polyprotein / 0.660
2j3q TFLAcetylcholinesterase 3.1.1.7 0.660
2jfz 003Glutamate racemase / 0.660
2jle I15Reverse transcriptase/RNaseH / 0.660
2mji KTRFatty acid-binding protein, intestinal / 0.660
2oaz I96Methionine aminopeptidase 2 / 0.660
2vcq D25Hematopoietic prostaglandin D synthase / 0.660
2vcw ZZAHematopoietic prostaglandin D synthase / 0.660
2x1z PIDPeridinin-chlorophyll a-binding protein 1, chloroplastic / 0.660
2x21 PIDPeridinin-chlorophyll a-binding protein 1, chloroplastic / 0.660
2xuj TZ5Acetylcholinesterase 3.1.1.7 0.660
2ybu CX9Acidic mammalian chitinase 3.2.1.14 0.660
3arv SAUChitinase A / 0.660
3arz I5IChitinase A / 0.660
3dys IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.660
3fnu 006HAP protein / 0.660
3gus N11Glutathione S-transferase P 2.5.1.18 0.660
3h18 PMSEsterase/lipase / 0.660
3hth PRLEbrA repressor / 0.660
3iis PIDPeridinin-chlorophyll a-binding protein 1, chloroplastic / 0.660
3irx UDRGag-Pol polyprotein 2.7.7.49 0.660
3kxo KXOHematopoietic prostaglandin D synthase / 0.660
3lg5 BTMEpi-isozizaene synthase 4.2.3.37 0.660
3mdv CL6Cholesterol 24-hydroxylase / 0.660
3n3z IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.660
3nf7 CIWGag-Pol polyprotein / 0.660
3nfa CBJGag-Pol polyprotein / 0.660
3ox3 4X4Ribosyldihydronicotinamide dehydrogenase [quinone] / 0.660
3qwh KMP17beta-hydroxysteroid dehydrogenase / 0.660
3qwi CUE17beta-hydroxysteroid dehydrogenase / 0.660
4b1f KRHGlutamate racemase / 0.660
4bbx LKFcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 3.1.4.17 0.660
4br3 U85Choline kinase alpha 2.7.1.32 0.660
4chz H75Integrase / 0.660
4cjw CBJIntegrase / 0.660
4dyp 0MSNucleoprotein / 0.660
4e4q RRHPeroxisome proliferator-activated receptor gamma / 0.660
4fiz CUE17beta-hydroxysteroid dehydrogenase / 0.660
4fj1 GEN17beta-hydroxysteroid dehydrogenase / 0.660
4fj2 QSO17beta-hydroxysteroid dehydrogenase / 0.660
4hg7 NUTE3 ubiquitin-protein ligase Mdm2 6.3.2 0.660
4i8v BHFCytochrome P450 1A1 1.14.14.1 0.660
3qi4 IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.654
3cne FMNPutative protease I / 0.652
3gcm 5GPPolyribonucleotide nucleotidyltransferase / 0.651
3itu IBMcGMP-dependent 3',5'-cyclic phosphodiesterase 3.1.4.17 0.650