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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gu9 4GU Focal adhesion kinase 1 2.7.10.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gu9 4GUFocal adhesion kinase 1 2.7.10.2 0.798
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1jpa ANPEphrin type-B receptor 2 2.7.10.1 0.689
4e4n 0NLTyrosine-protein kinase JAK1 / 0.688
1qpe PP2Tyrosine-protein kinase Lck 2.7.10.2 0.680
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.666
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.663
3blq ATPCyclin-dependent kinase 9 2.7.11.22 0.659
3vjo ANPEpidermal growth factor receptor 2.7.10.1 0.658
1e1v CMGCyclin-dependent kinase 2 2.7.11.22 0.653
4fx3 60KCyclin-dependent kinase 2 2.7.11.22 0.653
3b2t M33Fibroblast growth factor receptor 2 / 0.652