1.950 Å
X-ray
2000-05-11
| Min | Mean | Median | Standard Deviation | Max | Count | |
|---|---|---|---|---|---|---|
| pChEMBL: | 4.920 | 5.420 | 5.420 | 0.500 | 5.920 | 2 |
| Name: | Cyclin-dependent kinase 2 |
|---|---|
| ID: | CDK2_HUMAN |
| AC: | P24941 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.22 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 25.901 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.141 | 401.625 |
| % Hydrophobic | % Polar |
|---|---|
| 44.54 | 55.46 |
| According to VolSite | |

| HET Code: | CMG |
|---|---|
| Formula: | C12H17N5O |
| Molecular weight: | 247.296 g/mol |
| DrugBank ID: | DB02407 |
| Buried Surface Area: | 70.29 % |
| Polar Surface area: | 89.71 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 1.16161 | 28.3933 | 8.56983 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C9 | CG2 | ILE- 10 | 3.78 | 0 | Hydrophobic |
| C11 | CG2 | ILE- 10 | 4.45 | 0 | Hydrophobic |
| C15 | CG2 | ILE- 10 | 4.46 | 0 | Hydrophobic |
| C11 | CG2 | VAL- 18 | 3.6 | 0 | Hydrophobic |
| N9 | O | GLU- 81 | 2.57 | 153.99 | H-Bond (Ligand Donor) |
| N3 | N | LEU- 83 | 3.11 | 170.79 | H-Bond (Protein Donor) |
| C14 | CB | GLN- 131 | 3.94 | 0 | Hydrophobic |
| C9 | CD2 | LEU- 134 | 4.24 | 0 | Hydrophobic |