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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gi2 NAP Crotonyl-CoA carboxylase/reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gi2 NAPCrotonyl-CoA carboxylase/reductase / 1.164
4y0k NAPAntE / 0.748
4y1b NAPAntE / 0.731
3jv7 NADSecondary alcohol dehydrogenase / 0.687
3tqh NDPQuinone oxidoreductase / 0.681
5cdg NAJAlcohol dehydrogenase E chain 1.1.1.1 0.681
5kj6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.681
3wbf NAPMeso-diaminopimelate D-dehydrogenase / 0.680
2voj NADAlanine dehydrogenase 1.4.1.1 0.679
5kj1 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.679
5cds NAJAlcohol dehydrogenase E chain 1.1.1.1 0.676
4nfs NAJAlcohol dehydrogenase E chain 1.1.1.1 0.675
4ng5 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.675
4e5p NADPhosphonate dehydrogenase 1.20.1.1 0.674
3oq6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.673
4nfh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.673
5cdt NAJAlcohol dehydrogenase E chain 1.1.1.1 0.673
5kcz NAJAlcohol dehydrogenase E chain 1.1.1.1 0.673
4dxh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.672
5kcp NAJAlcohol dehydrogenase E chain 1.1.1.1 0.672
5kje NAJAlcohol dehydrogenase E chain 1.1.1.1 0.672
5kjf NAJAlcohol dehydrogenase E chain 1.1.1.1 0.672
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 0.671
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.671
1o8c NDPProbable acrylyl-CoA reductase AcuI 1.3.1.84 0.670
1x7d NADPutative ornithine cyclodeaminase / 0.670
4dwv NAJAlcohol dehydrogenase E chain 1.1.1.1 0.670
1u3v NADAlcohol dehydrogenase 1B 1.1.1.1 0.668
1u7h NADPutative ornithine cyclodeaminase / 0.666
4ejm NAPPutative zinc-binding dehydrogenase / 0.666
1mgo NADAlcohol dehydrogenase E chain 1.1.1.1 0.664
4jk3 NADUncharacterized protein / 0.660
1lde NADAlcohol dehydrogenase E chain 1.1.1.1 0.659
3wsw NADL-lactate dehydrogenase / 0.659
4oaq NDPR-specific carbonyl reductase / 0.659
3wbb NAPMeso-diaminopimelate D-dehydrogenase / 0.656
4dlb NADS-(hydroxymethyl)glutathione dehydrogenase / 0.656
2dfd NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.655
1bmd NADMalate dehydrogenase / 0.654
1yb5 NAPQuinone oxidoreductase 1.6.5.5 0.651
1yqx NAPSinapyl alcohol dehydrogenase / 0.650