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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fw3 L52 UDP-3-O-acyl-N-acetylglucosamine deacetylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fw3 L52UDP-3-O-acyl-N-acetylglucosamine deacetylase / 1.082
4fw4 3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.945
3p3e 3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.846
4lcg 1WMUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.793
4lch 1WNUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.790
4lcf 1WLUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.784
3nzk C90UDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.774
3p3c 3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.770
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3u1y 03IUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.707
4mqy 2CWUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.690
3lnv 1ZZSaframycin Mx1 synthetase B / 0.657