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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dta ADN APH(2'')-Id

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dta ADNAPH(2'')-Id / 0.775
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4dt8 ADNAPH(2'')-Id / 0.705
2itx ANPEpidermal growth factor receptor 2.7.10.1 0.668
4blt APCNTPase P4 / 0.665
4uya AGSMitogen-activated protein kinase kinase kinase 21 2.7.11.25 0.663
2pbz ATPUncharacterized protein / 0.660
3att ATPPutative aminoglycoside phosphotransferase 2.7.1 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4dca ADPAminoglycoside phosphotransferase / 0.657
4fic 0ULProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.654
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.653
3vjn ANPEpidermal growth factor receptor 2.7.10.1 0.652
1jpa ANPEphrin type-B receptor 2 2.7.10.1 0.650