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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cnz ADP Nitrogen regulatory protein P-II 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cnz ADPNitrogen regulatory protein P-II 1 / 1.075
3o5t ADPNitrogen regulatory protein P-II 1 / 0.770
3ta1 ADPNitrogen regulatory protein P-II (GlnB-3) / 0.740
2xzw ATPNitrogen regulatory protein P-II / 0.726
3tc5 3T5Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 5.2.1.8 0.681
3dg8 UMPBifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.680
4kqs IPEFarnesyl pyrophosphate synthase 2.5.1.10 0.679
1tsv UMPThymidylate synthase / 0.674
2j0s ANPEukaryotic initiation factor 4A-III 3.6.4.13 0.668
1v9o ADPSignaling protein / 0.664
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.663
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.662
4idp GNPAtlastin-1 3.6.5 0.662
1e1m NAPNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.660
3hb8 UMPThymidylate synthase 2.1.1.45 0.660
4lfg IPEPutative geranyltranstransferase / 0.657
1zha PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.656
1t8x PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.655
4nu0 AP5Adenylate kinase / 0.655
4yaw 2AMNADPH--cytochrome P450 reductase / 0.655
3sw1 FMNSensory box protein / 0.654
3p67 FMNPentaerythritol tetranitrate reductase / 0.653
1g28 FMNPHY3 / 0.652
1z2c GNPRho-related GTP-binding protein RhoC / 0.651
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.650
1vrq FMNSubunit alpha of sarocosine oxidase / 0.650
1vrq FMNSubunit beta of sarcosine oxidase / 0.650