2.090 Å
X-ray
2010-07-28
Name: | Nitrogen regulatory protein P-II 1 |
---|---|
ID: | P70731_AZOBR |
AC: | P70731 |
Organism: | Azospirillum brasilense |
Reign: | Bacteria |
TaxID: | 192 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 6 % |
B | 94 % |
B-Factor: | 22.756 |
---|---|
Number of residues: | 19 |
Including | |
Standard Amino Acids: | 18 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.120 | 351.000 |
% Hydrophobic | % Polar |
---|---|
40.38 | 59.62 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 33.84 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-44.7351 | 26.0227 | 13.6589 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2' | OG1 | THR- 29 | 2.76 | 171.88 | H-Bond (Ligand Donor) |
N3 | OG1 | THR- 29 | 3.2 | 164.93 | H-Bond (Protein Donor) |
N6 | O | ALA- 64 | 2.94 | 154.19 | H-Bond (Ligand Donor) |
N1 | N | ALA- 64 | 2.79 | 174.63 | H-Bond (Protein Donor) |
O3B | CZ | ARG- 101 | 3.97 | 0 | Ionic (Protein Cationic) |
O3B | NH1 | ARG- 101 | 2.92 | 153.15 | H-Bond (Protein Donor) |
O1B | NE | ARG- 103 | 2.77 | 168.56 | H-Bond (Protein Donor) |
O1B | NH2 | ARG- 103 | 3.37 | 131.4 | H-Bond (Protein Donor) |
O3B | NH2 | ARG- 103 | 3.07 | 150.08 | H-Bond (Protein Donor) |
O1B | CZ | ARG- 103 | 3.5 | 0 | Ionic (Protein Cationic) |