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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bb5 HD2 Corticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bb5 HD2Corticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 1.088
4bb6 HD1Corticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.729
4hfr 14MCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.693
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.664
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4e5l DBHPolymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.657
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.657
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.656
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.656
4e5f 0N7Polymerase acidic protein / 0.655
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.653