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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4af6 FAD Ferredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.319
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.072
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.056
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.050
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.049
1que FADFerredoxin--NADP reductase 1.18.1.2 1.041
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.036
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.032
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.029
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.029
1gaw FADFerredoxin / 1.024
1gaq FADFerredoxin / 1.023
3w5u FADFerredoxin / 1.019
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.010
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.007
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.003
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.003
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.997
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.992
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.990
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.990
1sm4 FADFerredoxin--NADP reductase / 0.987
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.985
3vo2 FADFerredoxin--NADP reductase / 0.984
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.980
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.978
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.972
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.967
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.961
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.960
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.954
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.948
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.948
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.944
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.940
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.933
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.932
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.916
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.916
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.909
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.901
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.892
2rc6 FADFerredoxin--NADP reductase / 0.891
2rc5 FADFerredoxin--NADP reductase / 0.872
3qfc FADNADPH--cytochrome P450 reductase / 0.866
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.861
1ja1 FADNADPH--cytochrome P450 reductase / 0.854
3qfs FADNADPH--cytochrome P450 reductase / 0.845
3ojw FADNADPH--cytochrome P450 reductase / 0.842
1tll FADNitric oxide synthase, brain 1.14.13.39 0.840
4y9u FADNADPH--cytochrome P450 reductase / 0.831
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.828
4y7c FADNADPH--cytochrome P450 reductase / 0.827
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.826
1amo FADNADPH--cytochrome P450 reductase / 0.815
4yau FADNADPH--cytochrome P450 reductase / 0.810
3qe2 FADNADPH--cytochrome P450 reductase / 0.807
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.805
4yaf FADNADPH--cytochrome P450 reductase / 0.803
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.801
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.794
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.779
3qft FADNADPH--cytochrome P450 reductase / 0.772
3qfr FADNADPH--cytochrome P450 reductase / 0.768
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.764
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.764
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.759
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.754
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.736
1ja0 FADNADPH--cytochrome P450 reductase / 0.730
2pia FMNPhthalate dioxygenase reductase / 0.730
2gpj FADSiderophore-interacting protein / 0.729
4ybn FADFlavin-nucleotide-binding protein / 0.710
3fpk FADFerredoxin-NADP reductase / 0.708
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.707
2eix FADNADH-cytochrome b5 reductase / 0.704
1cqx FADFlavohemoprotein / 0.697
1j9z FADNADPH--cytochrome P450 reductase / 0.696
4yao FADNADPH--cytochrome P450 reductase / 0.694
4k1x FADNADPH:ferredoxin reductase / 0.691
2bgj FADNADPH:ferredoxin reductase / 0.689
4fk8 FADFerredoxin--NADP reductase / 0.688
4y9r FADNADPH--cytochrome P450 reductase / 0.686
2bpo FADNADPH--cytochrome P450 reductase / 0.684
3pl8 FADPyranose 2-oxidase / 0.684
3in6 FMNUncharacterized protein / 0.683
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.682
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.681
2bn4 FADNADPH--cytochrome P450 reductase / 0.680
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.679
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.678
1gvh FADFlavohemoprotein / 0.675
2ptf FMNUncharacterized protein MTH_863 / 0.674
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.673
3is2 FADVivid PAS protein VVD / 0.673
5i39 FADL-amino acid deaminase / 0.673
2dvl FADAcyl-CoA dehydrogenase / 0.669
2bf4 FADNADPH--cytochrome P450 reductase / 0.666
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.664
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.664
3e4v FMNUncharacterized protein / 0.664
1c0k FADD-amino-acid oxidase 1.4.3.3 0.663
2rgh FADAlpha-Glycerophosphate Oxidase / 0.662
3pft FMNFlavin reductase / 0.661
1eje FMNProtein MTH_152 / 0.660
4gur FADLysine-specific histone demethylase 1B 1 0.660
1a8p FADFerredoxin--NADP reductase / 0.659
2b9y FADPutative aminooxidase / 0.659
2e83 FMNFMN-binding protein / 0.659
3a20 FMNFMN-binding protein / 0.659
3vy2 FMNFMN-binding protein / 0.659
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.658
2idv M7GEukaryotic translation initiation factor 4E-1 / 0.657
2q9u FMNA-type flavoprotein / 0.657
2vnk FADNADPH:ferredoxin reductase / 0.657
5buk FADFADH2-dependent halogenase / 0.657
5cho FADFlavin reductase / 0.657
1efp FADElectron transfer flavoprotein subunit alpha / 0.656
4bur FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.656
3if9 FADGlycine oxidase 1.4.3.19 0.654
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.653
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.653
4iil RBFMembrane lipoprotein TpN38(b) / 0.653
1wlk FMNFMN-binding protein / 0.652
2yqu FADDihydrolipoyl dehydrogenase / 0.651
4b4d FADFerredoxin-NADP reductase / 0.651
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.650