Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3znr NU9 Histone deacetylase 7 3.5.1.98

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3znr NU9Histone deacetylase 7 3.5.1.98 0.984
3zns NU7Histone deacetylase 7 3.5.1.98 0.857
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.744
2bri ANPUridylate kinase 2.7.4.22 0.744
2zue ANPArginine--tRNA ligase 6.1.1.19 0.744
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.744
3mle ADPATP-dependent dethiobiotin synthetase BioD 6.3.3.3 0.744
3sop GDPNeuronal-specific septin-3 / 0.744
4o3m ADPBloom syndrome protein 3.6.4.12 0.744
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.744
4z17 PEPEnolase / 0.744
5cyo GDPSeptin-9 / 0.744
1esn ANPPantothenate kinase 2.7.1.33 0.660
1f5n GNPGuanylate-binding protein 1 / 0.660
1gx1 CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.660
1ky2 GNPGTP-binding protein YPT7 / 0.660
1svw GTPProbable GTP-binding protein EngB / 0.660
1wdt GTPElongation factor G (EF-G-2) / 0.660
2oap ANPType II secretion system protein (GspE-2) / 0.660
2xka GSPCell division protein FtsZ / 0.660
2xtn GTPGTPase IMAP family member 2 / 0.660
3tjz GNPADP-ribosylation factor 1 / 0.660
4goj GNPADP-ribosylation factor-like protein 3 / 0.660
4hdq GNPRas-related protein Rap-1b / 0.660
5cyp GSPSeptin-9 / 0.660