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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w4y FAD Mitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.484
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.142
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.140
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.131
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.118
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.070
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.051
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.049
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.027
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.989
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.965
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.962
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.924
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.885
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.854
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.854
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.826
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.802
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.773
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.757
3ust FADAcMNPV orf92 / 0.748
3qzy FADFAD-linked sulfhydryl oxidase / 0.746
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.709
4opg FDAConserved Archaeal protein / 0.683
4opi FDAConserved Archaeal protein / 0.681
4opl FDAConserved Archaeal protein / 0.681
4opt FDAConserved Archaeal protein / 0.681
4opu FDAConserved Archaeal protein / 0.681
1rp4 FADEndoplasmic oxidoreductin-1 1.8.4 0.676
3atq FDAConserved Archaeal protein / 0.668
5j3w FMNSensory box protein / 0.667
3atr FDAConserved Archaeal protein / 0.666
1ryi FADGlycine oxidase 1.4.3.19 0.665
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.661
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.660
2gqw FADFerredoxin reductase / 0.658
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.658
4h4t FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.658
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.658
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.658
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.657
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.657
3ept FDAPutative FAD-monooxygenase / 0.652
4ees FMNPhototropin-2 2.7.11.1 0.651
4hj4 FMNLOV protein / 0.651
3sqx ANPATP-dependent RNA helicase MSS116, mitochondrial 3.6.4.13 0.650
4jnq FDAThioredoxin reductase / 0.650