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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w1w CHD Ferrochelatase, mitochondrial 4.99.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 1.087
2po7 CHDFerrochelatase, mitochondrial 4.99.1.1 0.865
2hrc CHDFerrochelatase, mitochondrial 4.99.1.1 0.834
2pnj CHDFerrochelatase, mitochondrial 4.99.1.1 0.834
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
2qd4 CHDFerrochelatase, mitochondrial 4.99.1.1 0.731
3f3y 4OABile salt sulfotransferase 2.8.2.14 0.707
4c49 HCYCorticosteroid-binding globulin / 0.687
1sr7 MOFProgesterone receptor / 0.686
3k9v CPS1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial / 0.684
2lfo GCHFatty acid-binding protein, liver / 0.682
2lba CHOFatty acid binding protein 6 / 0.681
4ple CPSNuclear receptor subfamily 5 group A member 2 / 0.676
2aa7 1CAMineralocorticoid receptor / 0.675
1qyx ASDEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.668
1kdm DHTSex hormone-binding globulin / 0.664
3s79 ASDAromatase 1.14.14.14 0.664
1i7g CPQPeroxisome proliferator-activated receptor alpha / 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4at2 ASDPossible succinate dehydrogenase / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2aa2 AS4Mineralocorticoid receptor / 0.659
4udc DEXGlucocorticoid receptor / 0.659
4j6d TESCytochrome P450 monooxygenase / 0.655
4lxj LANLanosterol 14-alpha demethylase 1.14.13.70 0.655
4ofu DHTAndrogen receptor / 0.655
4x86 CPSLarge proline-rich protein BAG6 / 0.655
4x86 CPSUbiquitin-like protein 4A / 0.655
1y5r C0RCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.654
2a3i C0RMineralocorticoid receptor / 0.654
3w5q 3KLVitamin D3 receptor / 0.654
4jbt ASDCytochrome P450 monooxygenase / 0.654
3g1r FIT3-oxo-5-beta-steroid 4-dehydrogenase / 0.653
1fm4 DXCMajor pollen allergen Bet v 1-L / 0.650
3eqm ASDAromatase 1.14.14.14 0.650
3iw1 ASDSteroid C26-monooxygenase 1.14.13.141 0.650