Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ubm COA Formyl-CoA:oxalate CoA-transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ubm COAFormyl-CoA:oxalate CoA-transferase / 1.353
2vjm COAFormyl-CoA:oxalate CoA-transferase / 0.823
1t3z CAOFormyl-CoA:oxalate CoA-transferase / 0.822
1vgq CAOFormyl-CoA:oxalate CoA-transferase / 0.813
1pt5 ACOFormyl-CoA:oxalate CoA-transferase / 0.811
1t4c COAFormyl-CoA:oxalate CoA-transferase / 0.789
1q6y COAFormyl-CoA:oxalate CoA-transferase / 0.781
1pt8 ACOFormyl-CoA:oxalate CoA-transferase / 0.746
2q0k NAPThioredoxin reductase 1.8.1.9 0.675
3gwd NAPCyclohexanone monooxygenase / 0.659
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.658
5by6 UMPThymidylate synthase / 0.655
1pr9 NAPL-xylulose reductase 1.1.1.10 0.654
4j7u NAPSepiapterin reductase 1.1.1.153 0.654
3ics COACoenzyme A disulfide reductase / 0.653
4ein NOHThymidylate synthase 2.1.1.45 0.652