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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3s0o 50Z Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.888
3r8v Z62Cyclin-dependent kinase 2 2.7.11.22 0.781
3r8u Z31Cyclin-dependent kinase 2 2.7.11.22 0.755
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.734
3qts X46Cyclin-dependent kinase 2 2.7.11.22 0.734
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.718
3rpr 25ZCyclin-dependent kinase 2 2.7.11.22 0.714
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.713
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.707
3s00 Z60Cyclin-dependent kinase 2 2.7.11.22 0.698
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.697
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.695
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.690
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.688
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.679
2w1h L0FCyclin-dependent kinase 2 2.7.11.22 0.678
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.675
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.675
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.673
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.671
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.670
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.670
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.668
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.664
2c6o 4SPCyclin-dependent kinase 2 2.7.11.22 0.662
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.661
1gz8 MBPCyclin-dependent kinase 2 2.7.11.22 0.657
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.657