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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rpv 26Z Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 1.032
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.916
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.909
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.904
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.904
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.862
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.855
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.852
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.818
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.795
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.789
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.762
3qu0 X40Cyclin-dependent kinase 2 2.7.11.22 0.760
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.753
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.750
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.746
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.742
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.736
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.735
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.726
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.722
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.721
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.719
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.693
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.691
4ccu AWFALK tyrosine kinase receptor 2.7.10.1 0.669
3qx4 X4BCyclin-dependent kinase 2 2.7.11.22 0.666
4ez3 0S0Cyclin-dependent kinase 2 2.7.11.22 0.665
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.662
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.662
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.661
2uzd C85Cyclin-dependent kinase 2 2.7.11.22 0.654
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.651
3rpr 25ZCyclin-dependent kinase 2 2.7.11.22 0.651