Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r5y F42 Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r5y F42Uncharacterized protein / 1.491
3r5z F42Uncharacterized protein / 0.979
3r5w F42Deazaflavin-dependent nitroreductase / 0.941
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.737
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.736
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.732
1amo FADNADPH--cytochrome P450 reductase / 0.723
2hq9 FADMll6688 protein / 0.721
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.712
3qfs FADNADPH--cytochrome P450 reductase / 0.709
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.707
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.706
4f07 FADStyrene monooxygenase component 2 / 0.701
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.700
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.692
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.689
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.688
1rz1 FADPhenol 2-hydroxylase component B / 0.688
2ptf FMNUncharacterized protein MTH_863 / 0.682
3vy2 FMNFMN-binding protein / 0.682
2bgi FADNADPH:ferredoxin reductase / 0.680
3a6r FMNFMN-binding protein / 0.680
3in6 FMNUncharacterized protein / 0.679
1ja1 FADNADPH--cytochrome P450 reductase / 0.678
1wlk FMNFMN-binding protein / 0.678
3a20 FMNFMN-binding protein / 0.678
1wli FMNFMN-binding protein / 0.677
3vo2 FADFerredoxin--NADP reductase / 0.677
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.676
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.675
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.674
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.670
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.667
2dji FADPyruvate oxidase / 0.667
4fk8 FADFerredoxin--NADP reductase / 0.665
3vy5 FMNFMN-binding protein / 0.664
2rc6 FADFerredoxin--NADP reductase / 0.663
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.662
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.662
3a6q FMNFMN-binding protein / 0.662
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.662
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.661
1flm FMNFMN-binding protein / 0.659
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.659
2vnk FADNADPH:ferredoxin reductase / 0.659
1gaq FADFerredoxin / 0.658
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.658
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.657
5cho FADFlavin reductase / 0.657
3pl8 FADPyranose 2-oxidase / 0.655
4y7c FADNADPH--cytochrome P450 reductase / 0.655
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.654
3a3b RBFLumazine protein / 0.654
3fpk FADFerredoxin-NADP reductase / 0.654
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.654
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.653
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.653
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.653
3qe2 FADNADPH--cytochrome P450 reductase / 0.652
3qfc FADNADPH--cytochrome P450 reductase / 0.651
1usc FMNMonooxygenase / 0.650