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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qw2 NAD Myo-inositol-1-phosphate synthase (Ino1)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qw2 NADMyo-inositol-1-phosphate synthase (Ino1) / 1.095
3qvs NADMyo-inositol-1-phosphate synthase (Ino1) / 0.902
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 0.885
3qvw NADMyo-inositol-1-phosphate synthase (Ino1) / 0.857
3qvt NAIMyo-inositol-1-phosphate synthase (Ino1) / 0.721
3d64 NADAdenosylhomocysteinase / 0.702
3cin NADMyo-inositol-1-phosphate synthase-related protein / 0.700
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.699
3dmt NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.697
4njo NADD-3-phosphoglycerate dehydrogenase, putative / 0.683
4l4s NAIL-lactate dehydrogenase A chain 1.1.1.27 0.680
3cif NADGlyceraldehyde-3-phosphate dehydrogenase / 0.679
1j5p NADL-aspartate dehydrogenase 1.4.1.21 0.678
1hyh NADL-2-hydroxyisocaproate dehydrogenase / 0.676
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.673
2hjr APRMalate dehydrogenase, adjacent gene encodes predicted lactate dehydrogenase / 0.671
2vyv NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.671
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.669
1ky4 NADAdenosylhomocysteinase 3.3.1.1 0.666
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.665
1lld NADL-lactate dehydrogenase 2 1.1.1.27 0.664
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.664
3cps NADGlyceraldehyde-3-phosphate dehydrogenase / 0.664
3s55 NADPutative short-chain dehydrogenase/reductase / 0.664
1o6z NADMalate dehydrogenase / 0.661
2oor NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.661
3l4s NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.660
4wct FADFructosyl amine:oxygen oxidoreductase / 0.660
1uxk NADMalate dehydrogenase / 0.659
2gsd NADFormate dehydrogenase / 0.658
4yac NAIC alpha-dehydrogenase / 0.657
1gyp NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.656
3cmc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.656
4z0h NADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic 1.2.1.12 0.656
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.655
1szj NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.654
2p5y NADUDP-glucose 4-epimerase / 0.654
4plp NADHomospermidine synthase 2.5.1.44 0.654
5c7o NADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific 1.2.1.12 0.654
1bmd NADMalate dehydrogenase / 0.652
1b3r NADAdenosylhomocysteinase 3.3.1.1 0.651
1guy NADMalate dehydrogenase / 0.651
1vjt NADAlpha-glucosidase, putative / 0.651
1gad NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.650
1i3l NADUDP-glucose 4-epimerase / 0.650
2nad NADFormate dehydrogenase / 0.650
3b1j NADGlyceraldehyde-3-phosphate dehydrogenase / 0.650
3pym NADGlyceraldehyde-3-phosphate dehydrogenase 3 1.2.1.12 0.650
4lcj NADC-terminal-binding protein 2 / 0.650
5cdt NAJAlcohol dehydrogenase E chain 1.1.1.1 0.650