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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qqk X02 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.902
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.824
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.805
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.798
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.789
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.783
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.766
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.760
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.748
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.747
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.737
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.734
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.731
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.731
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.711
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.706
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.684
2wms ZYSSerine/threonine-protein kinase Chk1 2.7.11.1 0.681
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.665
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.665
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.659
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.656
3r28 XA0Cyclin-dependent kinase 2 2.7.11.22 0.653
2izs BRQCasein kinase I isoform gamma-3 2.7.11.1 0.652
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.652
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.650