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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q23 G2P Virion DNA-directed RNA polymerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3q23 G2PVirion DNA-directed RNA polymerase / 1.083
4m42 ATPDNA-directed DNA polymerase / 0.788
4fj5 DTPDNA-directed DNA polymerase / 0.787
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.783
4fjh DGTDNA-directed DNA polymerase / 0.772
4fk4 DGTDNA-directed DNA polymerase / 0.766
4dtp DGTDNA-directed DNA polymerase / 0.763
4fjj TTPDNA-directed DNA polymerase / 0.762
4fjl DGTDNA-directed DNA polymerase / 0.762
4dtj TTPDNA-directed DNA polymerase / 0.758
4fjm DCPDNA-directed DNA polymerase / 0.758
4dtx TTPDNA-directed DNA polymerase / 0.746
3ne6 DCPDNA-directed DNA polymerase / 0.742
3g6x DGTDNA polymerase iota 2.7.7.7 0.738
3lzj CTPDNA-directed DNA polymerase / 0.737
4m3x ATPDNA-directed DNA polymerase / 0.736
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.731
4dto DCPDNA-directed DNA polymerase / 0.729
4khy TTPDNA-directed DNA polymerase / 0.726
4m3t ATPDNA-directed DNA polymerase / 0.725
3sup DCPDNA-directed DNA polymerase / 0.722
4dfk 0L5DNA polymerase I, thermostable 2.7.7.7 0.717
4dtm DCPDNA-directed DNA polymerase / 0.711
2q66 ATPPoly(A) polymerase 2.7.7.19 0.703
4xj4 3ATCyclic GMP-AMP synthase / 0.696
2ikf UTPPoly(A) polymerase, putative / 0.688
2b56 UTPRNA editing complex protein MP57 / 0.686
1r89 CTPCCA-adding enzyme 2.7.7.72 0.679
4k97 ATPCyclic GMP-AMP synthase / 0.675
4df8 0L4DNA polymerase I, thermostable 2.7.7.7 0.669
3au2 DGTDNA polymerase beta family (X family) / 0.668
1r8b ATPCCA-adding enzyme 2.7.7.72 0.664
3er9 3ATPoly(A) polymerase catalytic subunit 2.7.7.19 0.664
1cjv DADAdenylate cyclase type 2 / 0.663
1cjv DADAdenylate cyclase type 5 / 0.663
3hiy UTPUncharacterized protein / 0.663
1r8c UTPCCA-adding enzyme 2.7.7.72 0.661
2q16 ITTdITP/XTP pyrophosphatase / 0.659
5a2w AGSMitochondrial poly(A) polymerase / 0.659
4xj3 GTPCyclic GMP-AMP synthase / 0.658
4fvq ATPTyrosine-protein kinase JAK2 / 0.654
2b51 UTPRNA editing complex protein MP57 / 0.652
2q0c CTPPoly(A) polymerase, putative / 0.652