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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3oog YTP cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3oog YTPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.887
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1ydr IQPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.707
1rek B8LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.700
2c1a I5ScAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.690
1q8u H52cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.683
3vqh IQBcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.679
2jds L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.669
3qqh X0ACyclin-dependent kinase 2 2.7.11.22 0.665
2vth LZ2Cyclin-dependent kinase 2 2.7.11.22 0.661
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2uzw SS4cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3q3b 55EGlycogen synthase kinase-3 beta 2.7.11.26 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2f2u M77Rho-associated protein kinase 2 2.7.11.1 0.659
2hxq 373Serine/threonine-protein kinase Chk1 2.7.11.1 0.659
2xm9 LWHSerine/threonine-protein kinase Chk2 2.7.11.1 0.658
3fz1 B98Cyclin-dependent kinase 2 2.7.11.22 0.650