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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n0n P9B Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.952
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.891
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.855
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.845
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.820
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.809
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.795
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.791
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.781
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.780
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.775
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.772
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.767
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.764
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.764
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.760
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.760
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.754
3oim VZ5Carbonic anhydrase 2 4.2.1.1 0.754
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.754
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.750
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.746
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.745
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.739
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.733
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.731
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.726
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.723
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.723
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.722
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.722
3mho J43Carbonic anhydrase 2 4.2.1.1 0.720
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.719
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.718
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.715
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.713
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.711
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.710
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.708
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.708
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.704
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.700
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.694
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.686
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.685
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.685
3myq E27Carbonic anhydrase 2 4.2.1.1 0.685
1eou SMSCarbonic anhydrase 2 4.2.1.1 0.683
3bet CTFCarbonic anhydrase 2 4.2.1.1 0.682
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.677
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.672
1ttm 667Carbonic anhydrase 2 4.2.1.1 0.668
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.667
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.666
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.666
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.658
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.656
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.656
3hku TORCarbonic anhydrase 2 4.2.1.1 0.656
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.654
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.651