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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ms4 21N Glycogen phosphorylase, muscle form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ms4 21NGlycogen phosphorylase, muscle form 2.4.1.1 1.066
3mt8 17TGlycogen phosphorylase, muscle form 2.4.1.1 0.925
2qrq S13Glycogen phosphorylase, muscle form 2.4.1.1 0.865
2qln F59Glycogen phosphorylase, muscle form 2.4.1.1 0.845
4el5 D1MGlycogen phosphorylase, muscle form 2.4.1.1 0.837
3zcs CAWGlycogen phosphorylase, muscle form 2.4.1.1 0.830
3g2l LEWGlycogen phosphorylase, muscle form 2.4.1.1 0.828
3g2h KOTGlycogen phosphorylase, muscle form 2.4.1.1 0.825
4gpb GFPGlycogen phosphorylase, muscle form 2.4.1.1 0.820
5gpb GPMGlycogen phosphorylase, muscle form 2.4.1.1 0.820
2qn3 F55Glycogen phosphorylase, muscle form 2.4.1.1 0.801
2qn7 HBZGlycogen phosphorylase, muscle form 2.4.1.1 0.797
4el0 D1KGlycogen phosphorylase, muscle form 2.4.1.1 0.786
2g9v IFMGlycogen phosphorylase, muscle form 2.4.1.1 0.784
1noi NTZGlycogen phosphorylase, muscle form 2.4.1.1 0.782
1k08 BZDGlycogen phosphorylase, muscle form 2.4.1.1 0.766
3t3i GPWGlycogen phosphorylase, muscle form 2.4.1.1 0.744
4xsr UPGAlr3699 protein / 0.713
2g9u G27Glycogen phosphorylase, muscle form 2.4.1.1 0.675
4eke D1IGlycogen phosphorylase, muscle form 2.4.1.1 0.670