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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lmi ATP Myosin heavy chain kinase A 2.7.11.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lmi ATPMyosin heavy chain kinase A 2.7.11.7 1.101
3lmh ADPMyosin heavy chain kinase A 2.7.11.7 0.795
4zs4 ATPMyosin heavy chain kinase A 2.7.11.7 0.789
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.750
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.728
4zme ADNMyosin heavy chain kinase A 2.7.11.7 0.725
2zdg ADPD-alanine--D-alanine ligase / 0.724
3vpc ADPGlutamate--LysW ligase ArgX 6.3.2 0.722
2pyw ADPMethylthioribose kinase 2.7.1.100 0.719
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.717
4ffl ADPUncharacterized protein / 0.717
2p0a ANPSynapsin-3 / 0.707
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.704
3r5f ATPD-alanine--D-alanine ligase / 0.703
4qpm ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.703
4nzo ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.701
1px2 ATPSynapsin-1 / 0.700
3tw6 ADPPyruvate carboxylase / 0.699
3pdt ADPMyosin heavy chain kinase A 2.7.11.7 0.698
1mq4 ADPAurora kinase A 2.7.11.1 0.696
1m0w ANPGlutathione synthetase 6.3.2.3 0.695
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.693
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.693
4r8q ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.691
2qcs ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.689
5e9e ANPMyosin heavy chain kinase A 2.7.11.7 0.688
2dwb ANPAurora kinase A 2.7.11.1 0.687
4dee ADPAurora kinase A 2.7.11.1 0.687
1cdk ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.686
4ej7 ATPAminoglycoside 3'-phosphotransferase AphA1-IAB / 0.686
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.686
4mwh ATPCasein kinase II subunit alpha 2.7.11.1 0.686
5c1o ANPD-alanine--D-alanine ligase / 0.685
4ffm ADPUncharacterized protein / 0.683
4mam A12N5-carboxyaminoimidazole ribonucleotide synthase / 0.683
5c1p ADPD-alanine--D-alanine ligase / 0.682
3q1k ADPD-alanine--D-alanine ligase A 6.3.2.4 0.681
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.681
4ceg ADPAurora kinase A 2.7.11.1 0.681
1j7l ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.680
1ig1 ANPDeath-associated protein kinase 1 2.7.11.1 0.679
3t8o ATPRhodopsin kinase / 0.678
3t9d ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.678
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.678
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.676
3t9a ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.670
1ia9 ANPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.669
4bl1 ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.668
4wh2 ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.666
3eps ATPIsocitrate dehydrogenase kinase/phosphatase / 0.665
3tpt ADPSerine/threonine-protein kinase toxin HipA / 0.665
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.662
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.661
4utd ACPAurora kinase A 2.7.11.1 0.661
1csn ATPCasein kinase I homolog 1 2.7.11.1 0.660
2w5a ADPSerine/threonine-protein kinase Nek2 2.7.11.1 0.660
3udz ADPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.660
2b9j ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.658
2bkk ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.658
4dn5 AGSMitogen-activated protein kinase kinase kinase 14 2.7.11.25 0.657
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.657
5dr2 ATPAurora kinase A 2.7.11.1 0.657
3eth ATPN5-carboxyaminoimidazole ribonucleotide synthase / 0.656
2pml ANPUncharacterized protein / 0.654
4dh7 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
4mv8 ACPBiotin carboxylase 6.3.4.14 0.654
2b9f ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.653
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.653
3t54 ATPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.653
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.653
3c4w ATPRhodopsin kinase / 0.651
4ffr ATPUncharacterized protein / 0.651
1lp4 ANPCasein kinase II subunit alpha 2.7.11.1 0.650
3tdv GDPGentamicin resistance protein / 0.650
4gvj ADPNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.650