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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lij ANP Calcium/calmodulin dependent protein kinase with a kinase domain and 4 calmodulin like EF hands

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lij ANPCalcium/calmodulin dependent protein kinase with a kinase domain and 4 calmodulin like EF hands / 0.883
4f1m ACPProbable serine/threonine-protein kinase roco4 2.7.11.1 0.714
1fin ATPCyclin-dependent kinase 2 2.7.11.22 0.687
3q5i ANPProtein kinase, putative / 0.685
2qoc ANPEphrin type-A receptor 3 2.7.10.1 0.684
3vjo ANPEpidermal growth factor receptor 2.7.10.1 0.679
1jqh ANPInsulin-like growth factor 1 receptor 2.7.10.1 0.676
1zyd ATPeIF-2-alpha kinase GCN2 / 0.674
4fg8 ATPCalcium/calmodulin-dependent protein kinase type 1 2.7.11.17 0.673
5csh ATPCasein kinase II subunit alpha 2.7.11.1 0.671
4gva ADPMitogen-activated protein kinase 1 2.7.11.24 0.670
1gz8 MBPCyclin-dependent kinase 2 2.7.11.22 0.669
5cvf ATPCasein kinase II subunit alpha 2.7.11.1 0.669
2wqe ADPAurora kinase A 2.7.11.1 0.666
4riy ANPReceptor tyrosine-protein kinase erbB-3 2.7.10.1 0.666
1zy5 ANPeIF-2-alpha kinase GCN2 / 0.663
2ijm ATPFocal adhesion kinase 1 2.7.10.2 0.663
4s34 ANPMitogen-activated protein kinase 1 2.7.11.24 0.663
1zp9 ATPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.662
3cok ANPSerine/threonine-protein kinase PLK4 2.7.11.21 0.661
4ieb ANPCalmodulin-domain protein kinase 1 / 0.659
2olc ADPMethylthioribose kinase 2.7.1.100 0.656
4ct2 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.656
4gt3 ATPMitogen-activated protein kinase 1 2.7.11.24 0.656
4lv5 ADPRhoptry protein 5B / 0.655
4bwx AGSPAB-dependent poly(A)-specific ribonuclease subunit pan3 / 0.654
3lmg ANPReceptor tyrosine-protein kinase erbB-3 2.7.10.1 0.653
4fkl CK2Cyclin-dependent kinase 2 2.7.11.22 0.652
3qyw 6PBMitogen-activated protein kinase 1 2.7.11.24 0.651
4fl2 ANPTyrosine-protein kinase SYK 2.7.10.2 0.651
4uya AGSMitogen-activated protein kinase kinase kinase 21 2.7.11.25 0.651
2exm ZIPCyclin-dependent kinase 2 2.7.11.22 0.650
2gs7 ANPEpidermal growth factor receptor 2.7.10.1 0.650
2wep ADPATP-dependent molecular chaperone HSP82 / 0.650
4f0f ACPProbable serine/threonine-protein kinase roco4 2.7.11.1 0.650
4q5h ANPProtein kinase OspG 2.7 0.650