2.000 Å
X-ray
2005-06-09
| Name: | eIF-2-alpha kinase GCN2 |
|---|---|
| ID: | GCN2_YEAST |
| AC: | P15442 |
| Organism: | Saccharomyces cerevisiae |
| Reign: | Eukaryota |
| TaxID: | 559292 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 55.770 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.609 | 364.500 |
| % Hydrophobic | % Polar |
|---|---|
| 53.70 | 46.30 |
| According to VolSite | |

| HET Code: | ANP |
|---|---|
| Formula: | C10H13N6O12P3 |
| Molecular weight: | 502.164 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 54.54 % |
| Polar Surface area: | 322.68 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 3.74442 | 27.0114 | 40.1829 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2G | MG | MG- 306 | 2.03 | 0 | Metal Acceptor |
| O1B | MG | MG- 306 | 2.02 | 0 | Metal Acceptor |
| C4' | CB | LEU- 605 | 4.48 | 0 | Hydrophobic |
| C1' | CB | LEU- 605 | 3.98 | 0 | Hydrophobic |
| C5' | CG2 | VAL- 613 | 3.96 | 0 | Hydrophobic |
| C4' | CB | VAL- 613 | 4.25 | 0 | Hydrophobic |
| C1' | CG1 | VAL- 613 | 4.13 | 0 | Hydrophobic |
| N6 | O | GLU- 789 | 2.89 | 137.14 | H-Bond (Ligand Donor) |
| N1 | N | CYS- 791 | 2.97 | 165.41 | H-Bond (Protein Donor) |
| O1G | NZ | LYS- 837 | 2.93 | 128.02 | H-Bond (Protein Donor) |
| O1G | NZ | LYS- 837 | 2.93 | 0 | Ionic (Protein Cationic) |
| C2' | CZ | PHE- 842 | 4.42 | 0 | Hydrophobic |