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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kn5 ANP Ribosomal protein S6 kinase alpha-5 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kn5 ANPRibosomal protein S6 kinase alpha-5 2.7.11.1 0.804
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ckj ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.717
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.702
3b2t M33Fibroblast growth factor receptor 2 / 0.698
4j97 ACPFibroblast growth factor receptor 2 / 0.695
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.685
4j98 ACPFibroblast growth factor receptor 2 / 0.681
2ijm ATPFocal adhesion kinase 1 2.7.10.2 0.680
1zp9 ATPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.678
4ux9 ANPMitogen-activated protein kinase 8 2.7.11.24 0.678
1lp4 ANPCasein kinase II subunit alpha 2.7.11.1 0.674
2olc ADPMethylthioribose kinase 2.7.1.100 0.674
4f1o ACPProbable serine/threonine-protein kinase roco4 2.7.11.1 0.673
1daw ANPCasein kinase II subunit alpha 2.7.11.1 0.672
1qmz ATPCyclin-dependent kinase 2 2.7.11.22 0.671
1ny3 ADPMAP kinase-activated protein kinase 2 2.7.11.1 0.670
1zar ADPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.669
3gu4 ANPDeath-associated protein kinase 1 2.7.11.1 0.668
2qo9 ANPEphrin type-A receptor 3 2.7.10.1 0.666
3blq ATPCyclin-dependent kinase 9 2.7.11.22 0.666
4uya AGSMitogen-activated protein kinase kinase kinase 21 2.7.11.25 0.666
3att ATPPutative aminoglycoside phosphotransferase 2.7.1 0.663
2pz5 ACPFibroblast growth factor receptor 2 / 0.662
2pzp ACPFibroblast growth factor receptor 2 / 0.662
1m0w ANPGlutathione synthetase 6.3.2.3 0.661
1zth ADPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.661
3zxt ACPDeath-associated protein kinase 1 2.7.11.1 0.661
4e5f 0N7Polymerase acidic protein / 0.660
4ix4 ADPUncharacterized protein / 0.659
4k2r ANPTyrosine-protein kinase ZAP-70 2.7.10.2 0.659
4yxs EMUcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.658
1jkl ANPDeath-associated protein kinase 1 2.7.11.1 0.657
3w0n ANPHygromycin-B 4-O-kinase 2.7.1.163 0.657
4nm0 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.657
4jqe ANPCasein kinase II subunit alpha 2.7.11.1 0.656
5awm ANPStress-activated protein kinase JNK 2.7.11.24 0.656
2ijm ADPFocal adhesion kinase 1 2.7.10.2 0.655
2xs0 ANPMitogen-activated protein kinase 8 2.7.11.24 0.655
2eva ADNMitogen-activated protein kinase kinase kinase 7 2.7.11.25 0.654
3mfs ANPPeripheral plasma membrane protein CASK 2.7.11.1 0.654
4fl1 ANPTyrosine-protein kinase SYK 2.7.10.2 0.654
1i59 ADPChemotaxis protein CheA 2.7.13.3 0.653
2pwl ACPFibroblast growth factor receptor 2 / 0.653
3orp AGSSerine/threonine protein kinase / 0.653
3wow ANPCasein kinase II subunit alpha 2.7.11.1 0.653
3d5w ADPSerine/threonine-protein kinase PLK / 0.651
3f5u ANPDeath-associated protein kinase 1 2.7.11.1 0.650
4ach KDIGlycogen synthase kinase-3 beta 2.7.11.26 0.650