1.500 Å
X-ray
2013-01-24
| Name: | Uncharacterized protein |
|---|---|
| ID: | C1EBN1_MICCC |
| AC: | C1EBN1 |
| Organism: | Micromonas commoda |
| Reign: | Eukaryota |
| TaxID: | 296587 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 9 % |
| B | 91 % |
| B-Factor: | 20.466 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 1.254 | 415.125 |
| % Hydrophobic | % Polar |
|---|---|
| 60.98 | 39.02 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 55.31 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 32.3942 | 22.7213 | 9.21396 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1' | CD2 | LEU- 178 | 3.9 | 0 | Hydrophobic |
| C4' | CB | LEU- 178 | 3.43 | 0 | Hydrophobic |
| O3B | N | GLY- 181 | 3.14 | 168.47 | H-Bond (Protein Donor) |
| O3A | N | GLY- 181 | 3.05 | 126.37 | H-Bond (Protein Donor) |
| C5' | CB | VAL- 186 | 3.94 | 0 | Hydrophobic |
| C4' | CG1 | VAL- 186 | 4.49 | 0 | Hydrophobic |
| N6 | O | ALA- 262 | 2.91 | 139.93 | H-Bond (Ligand Donor) |
| N1 | N | GLU- 264 | 2.95 | 160.46 | H-Bond (Protein Donor) |
| C2' | CG2 | THR- 268 | 4.45 | 0 | Hydrophobic |
| C2' | CD1 | ILE- 337 | 3.57 | 0 | Hydrophobic |
| O1B | MG | MG- 602 | 2.44 | 0 | Metal Acceptor |
| O1A | MG | MG- 602 | 2.25 | 0 | Metal Acceptor |
| O2A | O | HOH- 952 | 2.78 | 179.98 | H-Bond (Protein Donor) |