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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3inw JZB Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3inw JZBHeat shock protein HSP 90-alpha / 1.162
3inx JZCHeat shock protein HSP 90-alpha / 0.861
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.852
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.846
1qy8 RDIEndoplasmin / 0.824
1u0z RDCEndoplasmin / 0.779
2xjj L81Heat shock protein HSP 90-alpha / 0.776
2xx5 13NATP-dependent molecular chaperone HSP82 / 0.769
2bt0 CT5Heat shock protein HSP 90-alpha / 0.764
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.760
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.759
2gfd RDAEndoplasmin / 0.757
2iwu NP5ATP-dependent molecular chaperone HSP82 / 0.754
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.750
2wer RDCATP-dependent molecular chaperone HSP82 / 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.743
2hkj RDCType 2 DNA topoisomerase 6 subunit B / 0.743
2ye9 2D4Heat shock protein HSP 90-alpha / 0.736
2yi5 YI5Heat shock protein HSP 90-alpha / 0.727
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.725
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.714
2xht C0YHeat shock protein HSP 90-alpha / 0.710
2xjx XJXHeat shock protein HSP 90-alpha / 0.706
2yjw YJWHeat shock protein HSP 90-alpha / 0.706
3k98 1RCHeat shock protein HSP 90-alpha / 0.704
4bqg 50QHeat shock protein HSP 90-alpha / 0.700
4mp2 PV1[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.700
2xx4 13IATP-dependent molecular chaperone HSP82 / 0.687
4mpn PV0[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.686
2bsm BSMHeat shock protein HSP 90-alpha / 0.684
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.680
2yk2 YJWHeat shock protein HSP 90-alpha / 0.670
4mp7 PFT[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.670
1yc3 4BCHeat shock protein HSP 90-alpha / 0.668
4e5f 0N7Polymerase acidic protein / 0.660
4ksg 920DNA gyrase subunit B / 0.658
4b7p 9UNHeat shock protein HSP 90-alpha / 0.656
4nh8 2LCHeat shock protein HSP 90-alpha / 0.652