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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hgm ATP TRAP-T-associated universal stress protein TeaD

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3hgm ATPTRAP-T-associated universal stress protein TeaD / 1.219
1mjh ATPUniversal stress protein MJ0577 / 0.882
3s3t ATPUniversal stress protein / 0.878
2z08 ATPUniversal stress protein family / 0.874
3ab8 ATPUncharacterized protein / 0.814
3cis ATPUniversal stress protein Rv2623 / 0.774
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.702
2dv4 SAHDiphthine synthase / 0.695
2e8h SAHDiphthine synthase / 0.692
2p6d SAHDiphthine synthase / 0.691
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.691
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.683
2e07 SAHDiphthine synthase / 0.681
2ejk SAHDiphthine synthase / 0.681
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.680
2p6k SAHDiphthine synthase / 0.680
2p6l SAHDiphthine synthase / 0.680
3o7b SAHRibosomal RNA small subunit methyltransferase Nep1 / 0.677
2dsi SAHDiphthine synthase / 0.675
2emr SAHDiphthine synthase / 0.675
2p5c SAHDiphthine synthase / 0.675
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.675
3bbd SAHRibosomal RNA small subunit methyltransferase Nep1 2.1.1 0.672
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.672
1kh2 ATPArgininosuccinate synthase / 0.670
5ahw CMPUniversal stress protein family protein, putative / 0.668
4x3l MTARNA 2'-O ribose methyltransferase / 0.667
1j1z ATPArgininosuccinate synthase / 0.662
5e9e ANPMyosin heavy chain kinase A 2.7.11.7 0.662
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.661
4kgn SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.660
2ejz SAHDiphthine synthase / 0.659
1kor ANPArgininosuccinate synthase / 0.658
2hux SAHDiphthine synthase / 0.658
3oij SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.658
1f9a ATPNicotinamide-nucleotide adenylyltransferase / 0.654
2pci SAHDiphthine synthase / 0.654
3ta2 ATPNitrogen regulatory protein P-II (GlnB-3) / 0.653
3ncr ADPNitrogen regulatory protein P-II (GlnB-2) / 0.652
4jwf SAHtRNA (guanine(9)-N1)-methyltransferase / 0.651
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.650