2.300 Å
X-ray
2001-11-29
Name: | Argininosuccinate synthase |
---|---|
ID: | ASSY_THET8 |
AC: | P59846 |
Organism: | Thermus thermophilus |
Reign: | Bacteria |
TaxID: | 300852 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 100 % |
B-Factor: | 36.838 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.993 | 1258.875 |
% Hydrophobic | % Polar |
---|---|
32.17 | 67.83 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 57.25 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
33.1694 | 51.7159 | 34.2226 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2' | O | ALA- 6 | 2.62 | 154.62 | H-Bond (Ligand Donor) |
C2' | CB | ALA- 6 | 3.99 | 0 | Hydrophobic |
O3G | N | GLY- 10 | 3.13 | 120.54 | H-Bond (Protein Donor) |
O2G | N | ASP- 12 | 2.76 | 128.64 | H-Bond (Protein Donor) |
O1G | N | THR- 13 | 3.24 | 126.66 | H-Bond (Protein Donor) |
C3' | CG2 | THR- 13 | 3.7 | 0 | Hydrophobic |
N6 | O | ALA- 33 | 2.99 | 147.54 | H-Bond (Ligand Donor) |
N1 | N | ALA- 33 | 3.27 | 167.53 | H-Bond (Protein Donor) |
O2' | N | GLY- 114 | 2.9 | 163 | H-Bond (Protein Donor) |
C4' | CE1 | PHE- 125 | 4.14 | 0 | Hydrophobic |
C1' | CZ | PHE- 125 | 3.47 | 0 | Hydrophobic |