2.300 Å
X-ray
2001-11-29
| Name: | Argininosuccinate synthase |
|---|---|
| ID: | ASSY_THET8 |
| AC: | P59846 |
| Organism: | Thermus thermophilus |
| Reign: | Bacteria |
| TaxID: | 300852 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| D | 100 % |
| B-Factor: | 36.838 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.993 | 1258.875 |
| % Hydrophobic | % Polar |
|---|---|
| 32.17 | 67.83 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 57.25 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 33.1694 | 51.7159 | 34.2226 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2' | O | ALA- 6 | 2.62 | 154.62 | H-Bond (Ligand Donor) |
| C2' | CB | ALA- 6 | 3.99 | 0 | Hydrophobic |
| O3G | N | GLY- 10 | 3.13 | 120.54 | H-Bond (Protein Donor) |
| O2G | N | ASP- 12 | 2.76 | 128.64 | H-Bond (Protein Donor) |
| O1G | N | THR- 13 | 3.24 | 126.66 | H-Bond (Protein Donor) |
| C3' | CG2 | THR- 13 | 3.7 | 0 | Hydrophobic |
| N6 | O | ALA- 33 | 2.99 | 147.54 | H-Bond (Ligand Donor) |
| N1 | N | ALA- 33 | 3.27 | 167.53 | H-Bond (Protein Donor) |
| O2' | N | GLY- 114 | 2.9 | 163 | H-Bond (Protein Donor) |
| C4' | CE1 | PHE- 125 | 4.14 | 0 | Hydrophobic |
| C1' | CZ | PHE- 125 | 3.47 | 0 | Hydrophobic |