2.150 Å
X-ray
2015-02-10
Name: | Universal stress protein family protein, putative |
---|---|
ID: | A0QYW6_MYCS2 |
AC: | A0QYW6 |
Organism: | Mycobacterium smegmatis 155) |
Reign: | Bacteria |
TaxID: | 246196 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 41.922 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.517 | 324.000 |
% Hydrophobic | % Polar |
---|---|
54.17 | 45.83 |
According to VolSite |
HET Code: | CMP |
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Formula: | C10H11N5O6P |
Molecular weight: | 328.198 g/mol |
DrugBank ID: | DB02527 |
Buried Surface Area: | 76.63 % |
Polar Surface area: | 167.48 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 2 |
Rings: | 4 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
16.4894 | 37.2744 | 52.8676 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2' | O | GLY- 10 | 2.53 | 161.69 | H-Bond (Ligand Donor) |
O2P | OG | SER- 16 | 2.67 | 150.38 | H-Bond (Ligand Donor) |
C3' | CB | SER- 17 | 3.88 | 0 | Hydrophobic |
N6 | O | ALA- 40 | 2.9 | 167.28 | H-Bond (Ligand Donor) |
N1 | N | ALA- 40 | 2.94 | 173.46 | H-Bond (Protein Donor) |
C4' | CB | VAL- 113 | 4.43 | 0 | Hydrophobic |
C1' | CG1 | VAL- 113 | 4.39 | 0 | Hydrophobic |
O2' | N | GLY- 114 | 3.44 | 154.15 | H-Bond (Protein Donor) |
O5' | N | VAL- 116 | 3.05 | 145.08 | H-Bond (Protein Donor) |
C5' | CB | VAL- 116 | 3.79 | 0 | Hydrophobic |
C1' | CG1 | VAL- 129 | 3.7 | 0 | Hydrophobic |
C5' | CG | PRO- 130 | 4.24 | 0 | Hydrophobic |
O1P | OG1 | THR- 146 | 2.6 | 164.68 | H-Bond (Protein Donor) |