2.150 Å
X-ray
2015-02-10
| Name: | Universal stress protein family protein, putative |
|---|---|
| ID: | A0QYW6_MYCS2 |
| AC: | A0QYW6 |
| Organism: | Mycobacterium smegmatis 155) |
| Reign: | Bacteria |
| TaxID: | 246196 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 41.922 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.517 | 324.000 |
| % Hydrophobic | % Polar |
|---|---|
| 54.17 | 45.83 |
| According to VolSite | |

| HET Code: | CMP |
|---|---|
| Formula: | C10H11N5O6P |
| Molecular weight: | 328.198 g/mol |
| DrugBank ID: | DB02527 |
| Buried Surface Area: | 76.63 % |
| Polar Surface area: | 167.48 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 2 |
| Rings: | 4 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 16.4894 | 37.2744 | 52.8676 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2' | O | GLY- 10 | 2.53 | 161.69 | H-Bond (Ligand Donor) |
| O2P | OG | SER- 16 | 2.67 | 150.38 | H-Bond (Ligand Donor) |
| C3' | CB | SER- 17 | 3.88 | 0 | Hydrophobic |
| N6 | O | ALA- 40 | 2.9 | 167.28 | H-Bond (Ligand Donor) |
| N1 | N | ALA- 40 | 2.94 | 173.46 | H-Bond (Protein Donor) |
| C4' | CB | VAL- 113 | 4.43 | 0 | Hydrophobic |
| C1' | CG1 | VAL- 113 | 4.39 | 0 | Hydrophobic |
| O2' | N | GLY- 114 | 3.44 | 154.15 | H-Bond (Protein Donor) |
| O5' | N | VAL- 116 | 3.05 | 145.08 | H-Bond (Protein Donor) |
| C5' | CB | VAL- 116 | 3.79 | 0 | Hydrophobic |
| C1' | CG1 | VAL- 129 | 3.7 | 0 | Hydrophobic |
| C5' | CG | PRO- 130 | 4.24 | 0 | Hydrophobic |
| O1P | OG1 | THR- 146 | 2.6 | 164.68 | H-Bond (Protein Donor) |