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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ahw CMP Universal stress protein family protein, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5ahw CMPUniversal stress protein family protein, putative / 0.956
4i01 CMPcAMP-activated global transcriptional regulator CRP / 0.704
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.702
2z08 ATPUniversal stress protein family / 0.694
3o7b SAHRibosomal RNA small subunit methyltransferase Nep1 / 0.691
3kcc CMPcAMP-activated global transcriptional regulator CRP / 0.690
1kor ANPArgininosuccinate synthase / 0.689
1g6n CMPcAMP-activated global transcriptional regulator CRP / 0.688
4i09 CMPcAMP-activated global transcriptional regulator CRP / 0.685
1cgp CMPcAMP-activated global transcriptional regulator CRP / 0.684
4x3l MTARNA 2'-O ribose methyltransferase / 0.677
4l2i FADElectron transfer flavoprotein alpha/beta-subunit / 0.676
4r8h SP1cAMP-activated global transcriptional regulator CRP / 0.675
1mjh ATPUniversal stress protein MJ0577 / 0.674
4jv4 1ORcAMP-dependent protein kinase type I-alpha regulatory subunit / 0.671
2ptm CMPHyperpolarization-activated (Ih) channel / 0.670
2k0g CMPCyclic nucleotide-gated potassium channel mll3241 / 0.669
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.668
3hgm ATPTRAP-T-associated universal stress protein TeaD / 0.668
3rk1 ATPN-type ATP pyrophosphatase superfamily / 0.668
3s3t ATPUniversal stress protein / 0.668
1kp3 ATPArgininosuccinate synthase 6.3.4.5 0.667
2ha8 SAHProbable methyltransferase TARBP1 / 0.666
3qop CMPcAMP-activated global transcriptional regulator CRP / 0.666
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.665
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.664
1ruo CMPcAMP-activated global transcriptional regulator CRP / 0.663
3cis ATPUniversal stress protein Rv2623 / 0.663
4ft8 CMPcAMP-activated global transcriptional regulator CRP / 0.662
3rou CMPcAMP-activated global transcriptional regulator CRP / 0.661
4hzf CMPcAMP-activated global transcriptional regulator CRP / 0.661
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.659
1j21 ATPArgininosuccinate synthase / 0.657
4ev0 CMPCyclic AMP receptor protein / 0.657
1j1z ATPArgininosuccinate synthase / 0.655
2cgp CMPcAMP-activated global transcriptional regulator CRP / 0.655
1cx4 CMPcAMP-dependent protein kinase type II-beta regulatory subunit / 0.654
1rgs CMPcAMP-dependent protein kinase type I-alpha regulatory subunit / 0.653
4jwf SAHtRNA (guanine(9)-N1)-methyltransferase / 0.653
4xfj ANPArgininosuccinate synthase / 0.653
4cnf MTASpoU rRNA methylase / 0.652
2ejz SAHDiphthine synthase / 0.651