2.500 Å
X-ray
2015-07-10
| Name: | tRNA (adenine(9)-N1)-methyltransferase |
|---|---|
| ID: | TRM10_SULAC |
| AC: | Q4J894 |
| Organism: | Sulfolobus acidocaldarius |
| Reign: | Archaea |
| TaxID: | 330779 |
| EC Number: | 2.1.1.218 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 95 % |
| B | 5 % |
| B-Factor: | 55.831 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 22 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.492 | 276.750 |
| % Hydrophobic | % Polar |
|---|---|
| 51.22 | 48.78 |
| According to VolSite | |

| HET Code: | SAH |
|---|---|
| Formula: | C14H20N6O5S |
| Molecular weight: | 384.411 g/mol |
| DrugBank ID: | DB01752 |
| Buried Surface Area: | 53.8 % |
| Polar Surface area: | 212.38 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| 46.0054 | 15.0978 | 36.3417 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2' | O | LEU- 158 | 2.76 | 156.88 | H-Bond (Ligand Donor) |
| C4' | CG2 | ILE- 179 | 4.07 | 0 | Hydrophobic |
| C1' | CG2 | ILE- 179 | 3.81 | 0 | Hydrophobic |
| O2' | N | GLY- 180 | 3 | 167.89 | H-Bond (Protein Donor) |
| N6 | O | ILE- 209 | 3.23 | 160.26 | H-Bond (Ligand Donor) |
| N1 | N | ILE- 209 | 3.07 | 174.91 | H-Bond (Protein Donor) |
| C5' | CG1 | ILE- 222 | 4.31 | 0 | Hydrophobic |
| C1' | CG1 | ILE- 225 | 4.17 | 0 | Hydrophobic |