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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3giy FMN (S)-mandelate dehydrogenase 1.1.99.31

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 1.290
2nli FMNLactate oxidase / 0.991
4yl2 FMNLactate oxidase / 0.984
2j6x FMNLactate oxidase / 0.973
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.937
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.926
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 0.915
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 0.908
2zfa FMNLactate oxidase / 0.868
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.807
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.807
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.793
2e77 FMNLactate oxidase / 0.792
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.792
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.790
3l5l FMNXenobiotic reductase / 0.789
2h8x FMNXenA / 0.787
4rje FNRLactate oxidase / 0.786
3n14 FMNXenobiotic reductase / 0.778
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.775
3l67 FMNXenobiotic reductase / 0.774
4cw5 FMNDfnA / 0.769
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.763
2z6i FMN2-nitropropane dioxygenase / 0.756
1z41 FMNNADPH dehydrogenase / 0.751
1z48 FMNNADPH dehydrogenase / 0.748
3aty FMNProstaglandin F2a synthase / 0.743
3atz FMNProstaglandin F2a synthase / 0.737
4e2b FMNDehydrogenase / 0.730
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.729
1h63 FMNPentaerythritol tetranitrate reductase / 0.727
3bw2 FMNPutative 2-nitropropane dioxygenase / 0.726
3n19 FNRXenobiotic reductase / 0.724
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.723
4yco FMNtRNA-dihydrouridine(16) synthase / 0.722
4utl FNRXenobiotic reductase / 0.720
4tmc FMNOld yellow enzyme / 0.718
3bw3 FMNPutative 2-nitropropane dioxygenase / 0.715
1vhn FMNtRNA-dihydrouridine synthase / 0.707
3bw4 FMNPutative 2-nitropropane dioxygenase / 0.706
4jic FMNGTN Reductase / 0.705
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.704
3gr8 FMNNADPH dehydrogenase / 0.703
3hf3 FMNChromate reductase / 0.703
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.703
4uth FMNXenobiotic reductase / 0.703
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.699
3sqp FADGlutathione reductase, mitochondrial 1.8.1.7 0.698
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.696
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.694
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.694
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.693
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.693
4utm FNRXenobiotic reductase / 0.693
5cpm FNRNADH:flavin oxidoreductase / 0.688
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.685
4m5p FMNNADPH dehydrogenase / 0.684
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.680
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.680
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.680
4h4s FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.679
4q4k FMNUncharacterized protein / 0.676
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.672
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 0.670
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.668
2gr1 FADFerredoxin reductase / 0.668
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.668
3ean FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.668
1typ FADTrypanothione reductase 1.8.1.12 0.666
2du2 FMNLactate oxidase / 0.666
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.666
2jk6 FADTrypanothione reductase / 0.665
2yvf FADFerredoxin reductase / 0.665
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.665
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.663
3gka FMNN-ethylmaleimide reductase / 0.663
3uwq U5POrotidine 5'-phosphate decarboxylase / 0.663
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.662
4utk FNRXenobiotic reductase / 0.660
1z44 FMNNADPH dehydrogenase / 0.659
2wp5 FADTrypanothione reductase / 0.659
4dna FADProbable glutathione reductase / 0.659
4h4t FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.659
4h4y FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.658
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.657
3tjl FMNNADPH dehydrogenase / 0.657
4j57 FADThioredoxin reductase 2 1.8.1.9 0.657
2gjl FMNNitronate monooxygenase 1.13.12.16 0.656
4df2 FMNNADPH dehydrogenase / 0.656
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.655
1vrq FMNSubunit alpha of sarocosine oxidase / 0.655
1vrq FMNSubunit beta of sarcosine oxidase / 0.655
1x31 FMNSubunit alpha of sarocosine oxidase / 0.655
1x31 FMNSubunit beta of sarcosine oxidase / 0.655
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.655
2gqw FADFerredoxin reductase / 0.654
2r9z FADGlutathione amide reductase / 0.654
4hia FMNLOV protein / 0.654
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.653
1eje FMNProtein MTH_152 / 0.652
4qai FMNNADPH dehydrogenase / 0.652
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.651
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.650