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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gh8 FMN Iodotyrosine deiodinase 1 1.21.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 1.376
4ttc FMNIodotyrosine deiodinase 1 / 1.148
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 1.106
4ttb FMNIodotyrosine deiodinase 1 / 0.963
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.896
3hj9 FMNUncharacterized protein / 0.887
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.881
3e39 FMNNitroreductase / 0.870
3eo8 FMNPutative nitroreductase / 0.867
3koq FMNPutative nitroreductase / 0.853
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.822
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.819
3ge6 FMNNitroreductase / 0.814
4qly FMNEnone reductase CLA-ER / 0.812
3pxv FMNNitroreductase / 0.810
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.803
2wzw FMNNitroreductase NfnB / 0.800
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.790
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.787
2wzv FMNNitroreductase NfnB / 0.785
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.784
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.771
2fre FMNNAD(P)H-flavin oxidoreductase / 0.768
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.765
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.746
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.746
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.745
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.740
3eof FMNPutative oxidase / 0.733
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.731
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.727
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.726
3of4 FMNNitroreductase / 0.726
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.726
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.723
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.723
2bkj FMNNADPH-flavin oxidoreductase / 0.721
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.718
3p4t FAOPutative acyl-CoA dehydrogenase / 0.717
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.713
2z1q FADAcyl-CoA dehydrogenase / 0.712
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.711
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.710
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.707
3e4v FMNUncharacterized protein / 0.706
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.705
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.704
3oib FDAPutative acyl-CoA dehydrogenase / 0.700
5ahs FADAcyl-CoA dehydrogenase / 0.699
2ifa FMNUncharacterized protein / 0.697
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.696
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.695
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.695
3a3b RBFLumazine protein / 0.692
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.692
5af7 FADAcyl-CoA dehydrogenase / 0.686
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.681
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.679
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.679
3in6 FMNUncharacterized protein / 0.678
4mih FADPyranose 2-oxidase 1.1.3.10 0.675
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.674
1gaq FADFerredoxin / 0.673
2c12 FADNitroalkane oxidase 1.7.3.1 0.670
3rpe FADPutative modulator of drug activity / 0.670
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.667
2ign FADPyranose 2-oxidase / 0.665
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.664
1x0p FADTll0078 protein / 0.663
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.661
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.660
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.659
3pl8 FADPyranose 2-oxidase / 0.658
1eje FMNProtein MTH_152 / 0.657
2jbs FMNp-hydroxyphenylacetate 3-hydroxylase, oxygenase component / 0.656
5fs6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.656
1rz1 FADPhenol 2-hydroxylase component B / 0.654
4yry FADGlutamate synthase, beta subunit / 0.654
1sbz FMNProbable UbiX-like flavin prenyltransferase / 0.650