sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3f0a | ACO | Spermidine N(1)-acetyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3f0a | ACO | Spermidine N(1)-acetyltransferase | / | 1.476 | |
| 3k9u | ACO | Spermidine N(1)-acetyltransferase | / | 1.158 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.834 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.815 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.814 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.805 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.801 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.792 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.783 | |
| 3vwd | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.781 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.779 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.772 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.771 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.770 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.760 | |
| 4ri1 | ACO | UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase | 2.3.1.202 | 0.760 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.756 | |
| 4if5 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.747 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.746 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.744 | |
| 4h6u | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.738 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.736 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.724 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.722 | |
| 4b5p | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.721 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.720 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.718 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.717 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.715 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.714 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.712 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.711 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.707 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.707 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.706 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.704 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.703 | |
| 3r95 | ACO | MccE protein | / | 0.700 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.698 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.697 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.696 | |
| 2vqy | ACO | AAC(6')-Ib | / | 0.695 | |
| 4h6z | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.695 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.695 | |
| 2ft0 | ACO | dTDP-fucosamine acetyltransferase | / | 0.692 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.691 | |
| 1pua | COA | HAT A1 | / | 0.691 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.691 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.689 | |
| 4jxr | ACO | Acetyltransferase | / | 0.689 | |
| 1pu9 | COA | HAT A1 | / | 0.685 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.683 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.680 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.679 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.679 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.674 | |
| 3cz7 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.672 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.671 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.669 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.669 | |
| 4r87 | COA | Spermidine N(1)-acetyltransferase | / | 0.669 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.668 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.667 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.666 | |
| 3fbu | COA | Acetyltransferase, GNAT family | / | 0.665 | |
| 1bo4 | COA | Aminoglycoside-(3)-N-acetyltransferase | / | 0.663 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.661 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.661 | |
| 4u9z | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.658 | |
| 2zfn | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.657 | |
| 4xpd | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.657 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.656 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.655 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.655 | |
| 1m1d | LYX | HAT A1 | / | 0.653 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.653 |