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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cy3 JN5 Serine/threonine-protein kinase pim-1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3cy3 JN5Serine/threonine-protein kinase pim-1 2.7.11.1 1.040
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
3r04 UNQSerine/threonine-protein kinase pim-1 2.7.11.1 0.738
4i41 MIXSerine/threonine-protein kinase pim-1 2.7.11.1 0.678
4fsz HK8Serine/threonine-protein kinase Chk1 2.7.11.1 0.670
3jpv 1DRSerine/threonine-protein kinase pim-1 2.7.11.1 0.667
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.664
2yig 5ELCollagenase 3 3.4.24 0.661
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.658
3bgq VX2Serine/threonine-protein kinase pim-1 2.7.11.1 0.656
5av4 GENDeath-associated protein kinase 1 2.7.11.1 0.656
1q8u H52cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
4hnf 16WCasein kinase I isoform delta 2.7.11.1 0.655
1you PFDCollagenase 3 3.4.24 0.654
3dcv 55ESerine/threonine-protein kinase pim-1 2.7.11.1 0.653