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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3au8 NDP 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3au8 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 1.135
4gae NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.873
3a14 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.781
3anl NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.760
1q0q NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.750
2i3g NAPN-acetyl-gamma-glutamyl-phosphate reductase 1.2.1.38 0.746
3ras NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.731
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.725
2jcv NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.710
1wp4 NDP3-hydroxyisobutyrate dehydrogenase / 0.701
2cvz NDP3-hydroxyisobutyrate dehydrogenase / 0.699
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.697
2jd1 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.696
4bv9 NDPKetimine reductase mu-crystallin 1.5.1.25 0.692
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.686
3hwr NDP2-dehydropantoate 2-reductase / 0.682
5eio NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.682
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.680
4rcv NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.679
1yjq NAP2-dehydropantoate 2-reductase 1.1.1.169 0.678
4kwh NAPReductase homolog / 0.676
1a4i NDPC-1-tetrahydrofolate synthase, cytoplasmic 1.5.1.5 0.673
1f0y NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.670
1yb5 NAPQuinone oxidoreductase 1.6.5.5 0.665
4j7x NAPSepiapterin reductase 1.1.1.153 0.665
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.664
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.663
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.662
4aic NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.661
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.660
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.658
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.658
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.658
2jd0 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.657
3adp NAILambda-crystallin 1.1.1.45 0.656
5bqf NAPProbable hydroxyacid dehydrogenase protein / 0.656
2rcy NAPPyrroline-5-carboxylate reductase / 0.654
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.654
3anm NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.653
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.653
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.651
1gq2 NAPNADP-dependent malic enzyme 1.1.1.40 0.650