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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zsb ADP Pantothenate kinase 2.7.1.33

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zsb ADPPantothenate kinase 2.7.1.33 0.878
2zs8 ADPPantothenate kinase 2.7.1.33 0.864
2zs9 ADPPantothenate kinase 2.7.1.33 0.826
3af1 GDPPantothenate kinase 2.7.1.33 0.826
3af0 GDPPantothenate kinase 2.7.1.33 0.789
2vp4 DCPDeoxynucleoside kinase / 0.728
1svl ADPLarge T antigen 3.6.4 0.688
1ytm ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.687
3dt4 GTPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.677
4qos ADPPsp operon transcriptional activator / 0.677
1ayl ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.675
2fgk ATPAlpha-hemolysin translocation ATP-binding protein HlyB / 0.675
2pg2 ADPKinesin-like protein KIF11 / 0.675
4b7b ADPKinesin-like protein KIF11 / 0.675
3ews ADPATP-dependent RNA helicase DDX19B 3.6.4.13 0.674
2fgj ATPAlpha-hemolysin translocation ATP-binding protein HlyB / 0.673
4qbi AP5Adenylate kinase / 0.668
1njf AGSDNA polymerase III subunit tau 2.7.7.7 0.666
1b7t ADPMyosin heavy chain, striated muscle / 0.665
4qxa GTPRas-related protein Rab-9A / 0.663
3vx4 ATPPutative ABC transporter, ATP-binding protein ComA / 0.662
3vhx GTPADP-ribosylation factor 6 / 0.661
1c3x 8IGPurine nucleoside phosphorylase 2.4.2.1 0.660
1i7c MGBS-adenosylmethionine decarboxylase proenzyme 4.1.1.50 0.660
2ce7 ADPATP-dependent zinc metalloprotease FtsH / 0.658
1yrs ADPKinesin-like protein KIF11 / 0.657
2j0v GDPRac-like GTP-binding protein ARAC7 / 0.657
3tgp GNPGTPase HRas / 0.656
5dif GNPGTP-binding nuclear protein Ran / 0.656
2vf7 ADPUvrABC system protein A / 0.654
4xvq GNPGTPase HRas / 0.653
1w1w AGSStructural maintenance of chromosomes protein 1 / 0.651
4cym GCPRas-related protein Rab-32 / 0.651
4iok ADPFormate--tetrahydrofolate ligase / 0.651
1z2c GNPRho-related GTP-binding protein RhoC / 0.650