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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2z1q FAD Acyl-CoA dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2z1q FADAcyl-CoA dehydrogenase / 1.335
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.908
3oib FDAPutative acyl-CoA dehydrogenase / 0.907
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.902
3owa FADAcyl-CoA dehydrogenase / 0.899
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.876
2pg0 FADAcyl-CoA dehydrogenase / 0.869
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.864
3p4t FAOPutative acyl-CoA dehydrogenase / 0.860
3r7k FDAProbable acyl CoA dehydrogenase / 0.856
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.813
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.813
5jsc FADPutative acyl-CoA dehydrogenase / 0.813
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.809
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.808
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.807
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.806
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.797
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.794
2eba FADPutative glutaryl-CoA dehydrogenase / 0.793
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.792
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.777
5af7 FADAcyl-CoA dehydrogenase / 0.775
4m9a FDAAcyl-CoA dehydrogenase / 0.774
3mkh FADNitroalkane oxidase / 0.768
5ahs FADAcyl-CoA dehydrogenase / 0.767
2dvl FADAcyl-CoA dehydrogenase / 0.763
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.747
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.745
4ttc FMNIodotyrosine deiodinase 1 / 0.740
2fon FADAcyl-coenzyme A oxidase / 0.736
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.734
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.719
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.717
3eo8 FMNPutative nitroreductase / 0.717
3hj9 FMNUncharacterized protein / 0.716
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.712
3fcj FADNitroalkane oxidase 1.7.3.1 0.702
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.697
2wzw FMNNitroreductase NfnB / 0.693
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.692
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.692
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.691
3hji FADVivid PAS protein VVD / 0.690
2zaf FADNitroalkane oxidase 1.7.3.1 0.689
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.687
4qly FMNEnone reductase CLA-ER / 0.684
2reh FADNitroalkane oxidase 1.7.3.1 0.683
1eje FMNProtein MTH_152 / 0.682
2bkj FMNNADPH-flavin oxidoreductase / 0.682
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.682
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.680
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.678
2wzv FMNNitroreductase NfnB / 0.678
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.677
4kuk RBFPutative blue-light photoreceptor / 0.675
1n9l FMNPutative blue light receptor / 0.674
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.674
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.671
1d7y FADFerredoxin reductase / 0.670
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.670
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.669
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.665
3ge6 FMNNitroreductase / 0.665
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.664
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.662
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.662
3qvr FADGlucose oxidase 1.1.3.4 0.662
3cox FADCholesterol oxidase 1.1.3.6 0.661
2yyi FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 0.660
2d29 FADAcyl-CoA dehydrogenase / 0.659
3d72 FADVivid PAS protein VVD / 0.659
1pkv RBFRiboflavin synthase 2.5.1.9 0.657
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.657
2c12 FADNitroalkane oxidase 1.7.3.1 0.657
3all FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.654
2wes FADTryptophan 5-halogenase / 0.653
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.651
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.651