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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yi6 6QM Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yi6 6QMHeat shock protein HSP 90-alpha / 0.980
2yi5 YI5Heat shock protein HSP 90-alpha / 0.861
2bt0 CT5Heat shock protein HSP 90-alpha / 0.835
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.812
2yk2 YJWHeat shock protein HSP 90-alpha / 0.799
3hhu 819Heat shock protein HSP 90-alpha / 0.799
2xht C0YHeat shock protein HSP 90-alpha / 0.795
2xjx XJXHeat shock protein HSP 90-alpha / 0.794
2xab VHDHeat shock protein HSP 90-alpha / 0.793
2vcj 2EQHeat shock protein HSP 90-alpha / 0.776
3eko PYUHeat shock protein HSP 90-alpha / 0.775
2xjj L81Heat shock protein HSP 90-alpha / 0.774
1yc1 4BCHeat shock protein HSP 90-alpha / 0.770
2yjw YJWHeat shock protein HSP 90-alpha / 0.769
2ye4 2FYHeat shock protein HSP 90-alpha / 0.768
1yc4 43PHeat shock protein HSP 90-alpha / 0.767
1yc3 4BCHeat shock protein HSP 90-alpha / 0.751
3ekr PY9Heat shock protein HSP 90-alpha / 0.750
3k98 1RCHeat shock protein HSP 90-alpha / 0.747
2byi 2DDHeat shock protein HSP 90-alpha / 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3k99 PFTHeat shock protein HSP 90-alpha / 0.739
1qy8 RDIEndoplasmin / 0.731
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.726
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.720
2vci 2GJHeat shock protein HSP 90-alpha / 0.688
2byh 2D7Heat shock protein HSP 90-alpha / 0.686
4mp7 PFT[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.683
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.674
3k97 4CDHeat shock protein HSP 90-alpha / 0.670
4e5l DBHPolymerase acidic protein / 0.670
4e5f 0N7Polymerase acidic protein / 0.660
2bsm BSMHeat shock protein HSP 90-alpha / 0.656
3kkv B99cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.656
2uwd 2GGHeat shock protein HSP 90-alpha / 0.651
2ccu 2D9Heat shock protein HSP 90-alpha / 0.650