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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ydi YDI Serine/threonine-protein kinase Chk1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ydi YDISerine/threonine-protein kinase Chk1 2.7.11.1 0.788
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2ydk YDKSerine/threonine-protein kinase Chk1 2.7.11.1 0.730
4ftc H6KSerine/threonine-protein kinase Chk1 2.7.11.1 0.687
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.677
3w6h AZMCarbonic anhydrase 1 4.2.1.1 0.668
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.660
4e5f 0N7Polymerase acidic protein / 0.660
2wmq ZYQSerine/threonine-protein kinase Chk1 2.7.11.1 0.656
4bid IE8Mitogen-activated protein kinase kinase kinase 5 2.7.11.25 0.652
4egi B2JHeat shock protein HSP 90-alpha / 0.652
3vjo ANPEpidermal growth factor receptor 2.7.10.1 0.651