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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2wmq

2.480 Å

X-ray

2009-07-03

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Serine/threonine-protein kinase Chk1
ID:CHK1_HUMAN
AC:O14757
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:2.7.11.1


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:48.992
Number of residues:21
Including
Standard Amino Acids: 21
Non Standard Amino Acids: 0
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.099718.875

% Hydrophobic% Polar
51.1748.83
According to VolSite

Ligand :
2wmq_1 Structure
HET Code: ZYQ
Formula: C9H11N3O2S
Molecular weight: 225.268 g/mol
DrugBank ID: DB08776
Buried Surface Area:57.15 %
Polar Surface area: 99.33 Å2
Number of
H-Bond Acceptors: 3
H-Bond Donors: 2
Rings: 2
Aromatic rings: 1
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 1

Mass center Coordinates

XYZ
13.2881-1.432337.73693


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
SAJCD1LEU- 154.330Hydrophobic
CAFCG1VAL- 233.790Hydrophobic
NAHOGLU- 852.87174.77H-Bond
(Ligand Donor)
OACNCYS- 872.93165.46H-Bond
(Protein Donor)
CAACGGLU- 914.390Hydrophobic
SAJCD1LEU- 1374.020Hydrophobic
CADCD1LEU- 1373.40Hydrophobic
CADCBSER- 1474.370Hydrophobic