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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2x9n AX3 Pteridine reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2x9n AX3Pteridine reductase / 0.763
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3bmn AX3Pteridine reductase / 0.696
3jq7 DX2Pteridine reductase, putative / 0.671
1e7w MTXPteridine reductase 1 1.5.1.33 0.670
3w6h AZMCarbonic anhydrase 1 4.2.1.1 0.665
4blt APCNTPase P4 / 0.665
2vz0 D64Pteridine reductase / 0.659
3jqg AX6Pteridine reductase, putative / 0.659
4c2w ANPAurora kinase B-A 2.7.11.1 0.653