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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vwq NAP Glucose 1-dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vwq NAPGlucose 1-dehydrogenase / 1.091
2vwh NAPGlucose 1-dehydrogenase / 1.063
2b5v NAPGlucose 1-dehydrogenase / 1.046
2vwp NDPGlucose 1-dehydrogenase / 0.949
2c3d COM2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.704
1u7h NADPutative ornithine cyclodeaminase / 0.687
1x7d NADPutative ornithine cyclodeaminase / 0.685
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.682
3jv7 NADSecondary alcohol dehydrogenase / 0.682
1lde NADAlcohol dehydrogenase E chain 1.1.1.1 0.677
1pr9 NAPL-xylulose reductase 1.1.1.10 0.676
3wle NAD(R)-specific carbonyl reductase / 0.676
4b7x NAPProbable oxidoreductase / 0.675
1h2b NAJNAD-dependent alcohol dehydrogenase / 0.674
1tsv UMPThymidylate synthase / 0.670
2bd0 NAPSepiapterin reductase / 0.668
4w6z 8IDAlcohol dehydrogenase 1 1.1.1.1 0.667
4ng5 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.666
1a71 NADAlcohol dehydrogenase E chain 1.1.1.1 0.665
1uxj NADMalate dehydrogenase / 0.665
4nfs NAJAlcohol dehydrogenase E chain 1.1.1.1 0.665
1u3v NADAlcohol dehydrogenase 1B 1.1.1.1 0.664
2gmv PEPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.664
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 0.664
5kje NAJAlcohol dehydrogenase E chain 1.1.1.1 0.664
1guf NDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial 1.3.1.10 0.663
3phi NDPShikimate dehydrogenase (NADP(+)) / 0.663
4oaq NDPR-specific carbonyl reductase / 0.663
2x0i NAIMalate dehydrogenase / 0.662
4lfg IPEPutative geranyltranstransferase / 0.660
3nx4 NAPPutative oxidoreductase / 0.659
3krf IPEGeranyl diphosphate synthase large subunit / 0.658
1ht0 NADAlcohol dehydrogenase 1C 1.1.1.1 0.657
1o6z NADMalate dehydrogenase / 0.657
2oxi NADAlcohol dehydrogenase E chain 1.1.1.1 0.657
4hxy NDPPlm1 / 0.657
4h0u UMPThymidylate synthase / 0.656
1hld NADAlcohol dehydrogenase E chain 1.1.1.1 0.653
1f8f NADBenzyl alcohol dehydrogenase / 0.652
3wie DN4Glucose 1-dehydrogenase / 0.651
1gv0 NADMalate dehydrogenase / 0.650
4hfm NAP2-alkenal reductase (NADP(+)-dependent) / 0.650
4iwn GEKCarboxy-S-adenosyl-L-methionine synthase / 0.650