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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vez ACO Glucosamine 6-phosphate acetyltransferase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 1.424
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 1.126
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 1.099
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.942
1b87 ACOAac(6')-Ii protein / 0.927
2a4n COAAac(6')-Ii protein / 0.904
3pgp ACOUncharacterized protein / 0.897
5kf9 ACOPredicted acetyltransferase / 0.875
1n71 COAAac(6')-Ii protein / 0.867
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.867
5kgp ACOPredicted acetyltransferase / 0.860
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.858
1qsm ACOHistone acetyltransferase HPA2 / 0.854
5kf8 ACOPredicted acetyltransferase / 0.850
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.841
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.837
2bsw CAOProbable acetyltransferase / 0.829
3mgd ACOPredicted acetyltransferase / 0.826
2jdd ACOProbable acetyltransferase / 0.824
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.823
2cns ACORibosomal-protein-alanine acetyltransferase / 0.822
1l0c COTSerotonin N-acetyltransferase / 0.821
3s6f COAUncharacterized protein / 0.821
1j4j ACOAcetyltransferase 2.3.1 0.820
1ib1 COTSerotonin N-acetyltransferase / 0.816
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.815
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.811
2jdc CAOProbable acetyltransferase / 0.808
4kub COAUncharacterized protein / 0.808
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.805
5kgj ACOPredicted acetyltransferase / 0.801
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.799
5kf2 ACOPredicted acetyltransferase / 0.797
4ava ACOAcetyltransferase Pat 2.3.1 0.788
3exn ACOProbable acetyltransferase / 0.783
2ozu ACOHistone acetyltransferase KAT6A / 0.778
5kf1 ACOPredicted acetyltransferase / 0.778
5kgh ACOPredicted acetyltransferase / 0.776
1ghe ACOAcetyltransferase 2.3.1 0.775
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.775
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.773
2cy2 ACOProbable acetyltransferase / 0.772
2rc4 ACOHistone acetyltransferase KAT6A / 0.767
1kuv CA5Serotonin N-acetyltransferase / 0.765
2vqy ACOAAC(6')-Ib / 0.763
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.763
4crz ACOPanD regulatory factor / 0.761
2bue COAAAC(6')-Ib / 0.755
1mja COAHistone acetyltransferase ESA1 / 0.752
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.748
2b3v ACODiamine acetyltransferase 1 / 0.747
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.746
2o28 COAGlucosamine 6-phosphate N-acetyltransferase / 0.745
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.744
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.744
3d2m COAAmino-acid acetyltransferase / 0.740
2ou2 ACOHistone acetyltransferase KAT5 / 0.736
4r3k COAN-alpha-acetyltransferase 2.3.1 0.735
2r8v ACOAmino-acid acetyltransferase / 0.734
1fy7 COAHistone acetyltransferase ESA1 / 0.728
1mj9 COAHistone acetyltransferase ESA1 / 0.728
2y0m ACOHistone acetyltransferase KAT8 / 0.724
3r1k COAN-acetyltransferase Eis / 0.724
1mjb ACOHistone acetyltransferase ESA1 / 0.723
1pu9 COAHAT A1 / 0.722
1cjw COTSerotonin N-acetyltransferase / 0.719
4jwp ACOGCN5-related N-acetyltransferase / 0.718
5kf2 COAPredicted acetyltransferase / 0.716
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.713
1qsr ACOHAT A1 / 0.710
3bj7 COADiamine acetyltransferase 1 / 0.710
4r87 COASpermidine N(1)-acetyltransferase / 0.710
3f0a ACOSpermidine N(1)-acetyltransferase / 0.706
1wwz ACOUncharacterized protein / 0.698
3zj0 ACOPutative acetyltransferase OgpAT / 0.698
1m1d LYXHAT A1 / 0.696
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.695
1v0c ACOAAC(6')-Ib / 0.694
5kf8 COAPredicted acetyltransferase / 0.693
4qvt ACOAcetyltransferase YpeA 2.3.1 0.691
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.690
2giv ACOHistone acetyltransferase KAT8 / 0.683
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.682
4kvm SER_ALA_SER_GLU_1XEN-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.680
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.679
3gya COAGCN5-related N-acetyltransferase / 0.679
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.678
3k9u ACOSpermidine N(1)-acetyltransferase / 0.677
3te4 ACODopamine N-acetyltransferase / 0.677
2x7b COAN-alpha-acetyltransferase 2.3.1 0.676
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.676
4jxr ACOAcetyltransferase / 0.675
3f8k COAUncharacterized protein / 0.671
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.668
4ri1 ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2.3.1.202 0.668
2fxf ACODiamine acetyltransferase 1 / 0.664
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.664
3gy9 COAGCN5-related N-acetyltransferase / 0.663
1qsn COAHAT A1 / 0.661
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.661
4psw COAHistone acetyltransferase type B catalytic subunit / 0.661
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 0.658
5c88 COAN-alpha-acetyltransferase / 0.658
3r95 ACOMccE protein / 0.656
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.655
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.653
2psw COAN-alpha-acetyltransferase 50 / 0.651